PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G337700.3
Common NameB456_009G337700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 359aa    MW: 40742.8 Da    PI: 9.506
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G337700.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.3e-13180222754
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          +Er+RR++iN+ +++Lr l+Pk +      K++  +iL+ A+eYI +L
  Gorai.009G337700.3 180 VMERNRRKKINDQLFKLRALVPKiS------KMDRTAILTDAIEYIGDL 222
                         69*********************66......***************876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.93E-9171227No hitNo description
SuperFamilySSF474591.03E-14172238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.081173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-12179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-10180222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-14180239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSFLQEMTGT RVLIPVFSGL IELFTSEHMP KDQNLIELVT SQCNAVLKQE ITTGENYAKA  60
NLDKCYNLPF SISLSTFVPR IELIPPISDS NSHHSLDGSH SGSSPSIEHP PFASDSAYIS  120
QDEQFKQLIG TYYGTKRLRC SKNVPEQQAR FAPDGNKSIK DKTRTTKQPA KEKFHSKNLV  180
MERNRRKKIN DQLFKLRALV PKISKMDRTA ILTDAIEYIG DLLEEKKKLE NELMKIDEEN  240
CEKSNLELKS TLLDKSPKDN MSAVKPNQVS SSLAKMAKME VHVEVNQLTK REFLIKLYYE  300
HKRGSFAKLM EGIDSLGLQV IDANVTTFNG KVLSMFKVEA NRDFQSRKLR DFLTNLTK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438254.11e-151PREDICTED: transcription factor bHLH90-like isoform X2
TrEMBLA0A0D2TWF60.0A0A0D2TWF6_G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.12e-30bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]